PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013600796.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family Trihelix
Protein Properties Length: 301aa    MW: 33547.9 Da    PI: 10.3772
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013600796.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix46.87.9e-1526126186
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.............rergferspkqCkekwenlnkrykkikegekkr..tsessstcp 80 
                     +W+++ + +Li+a  ++  +l+rg+l++++W+ev++++             ++ + +r+ +qCk++++ l+k+yk +k++ ++   + + +st+p
  XP_013600796.1  26 CWSEEATFTLIQAWGSRYVNLSRGSLRQNHWQEVANAVndrhfntgrnvsaAKSQPSRTDVQCKNRIDTLKKKYKVEKARVSGAggSGGYVSTWP 120
                     7*************************************************999999*******************9999876654478999**** PP

        trihelix  81 yfdqle 86 
                     +f++l+
  XP_013600796.1 121 FFSDLD 126
                     ****98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138373.0E-2424128No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MKHAVNGSFS PGSSRPSPST LSREDCWSEE ATFTLIQAWG SRYVNLSRGS LRQNHWQEVA  60
NAVNDRHFNT GRNVSAAKSQ PSRTDVQCKN RIDTLKKKYK VEKARVSGAG GSGGYVSTWP  120
FFSDLDDLLG ETFPTSSATP SLQMTIVPVP VAPRSAIPRR PAPAPAIMRI GGDNLLGYRG  180
NLNAFAAAAA AAASSPAYED DSDGSRSRSS GGKRKREEKQ GYKEVAEAIE RLREIYERVE  240
ERKRKEMVEL EKQRMRFAKE LECHRMQLFT EMRVRLHKLR RTKGPTSSAL GYGMMDLPSY  300
L
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1892210.0AC189221.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB010L05, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013663658.10.0PREDICTED: trihelix transcription factor ASIL2-like
RefseqXP_013663657.10.0PREDICTED: trihelix transcription factor ASIL2-like
RefseqXP_013600796.10.0PREDICTED: trihelix transcription factor ASIL2-like
TrEMBLA0A078C7010.0A0A078C701_BRANA; BnaC08g29350D protein
TrEMBLA0A0D3DU740.0A0A0D3DU74_BRAOL; Uncharacterized protein
STRINGBra007407.1-P1e-166(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM96352334
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58630.11e-102sequence-specific DNA binding transcription factors